graphite - GRAPH Interaction from pathway Topological Environment
Graph objects from pathway topology derived from KEGG, Panther, PathBank, PharmGKB, Reactome SMPDB and WikiPathways databases.
Last updated 4 months ago
pathwaysthirdpartyclientgraphandnetworknetworkreactomekeggmetabolomicsbioinformaticsmirrorpathway-analysis
10.17 score 7 stars 21 dependents 122 scripts 4.3k downloadsparmigene - Parallel Mutual Information Estimation for Gene Network Reconstruction
Parallel estimation of the mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks (Sales et al, 2011 <doi:10.1093/bioinformatics/btr274>).
Last updated 5 months ago
openmp
6.06 score 5 stars 4 dependents 38 scripts 512 downloadsspatialDE - R wrapper for SpatialDE
SpatialDE is a method to find spatially variable genes (SVG) from spatial transcriptomics data. This package provides wrappers to use the Python SpatialDE library in R, using reticulate and basilisk.
Last updated 4 months ago
softwaretranscriptomicspythonspatial-datawrapper
4.76 score 3 stars 16 scripts 264 downloads